openbabel-3.2.1-4.1 RPM for riscv64

From OpenSuSE Ports Tumbleweed for riscv64

Open Babel is a chemical toolbox understanding many formats of
chemical data. It allows to search, convert, analyze, or store data
from molecular modeling, chemistry, solid-state materials,
biochemistry, or related areas.

This package contains the command-line utility, which is intended to
be used as a replacement for the original babel program, to translate
between various chemical file formats as well as a wide variety of
utilities to foster development of other open source scientific
software.

Provides

• openbabel
• openbabel(riscv-64)

Requires

• ld-linux-riscv64-lp64d.so.1()(64bit)
• ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit)
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.27)(64bit)
• libc.so.6(GLIBC_2.32)(64bit)
• libc.so.6(GLIBC_2.34)(64bit)
• libc.so.6(GLIBC_2.38)(64bit)
• libgcc_s.so.1()(64bit)
• libgcc_s.so.1(GCC_3.0)(64bit)
• libgcc_s.so.1(GCC_3.3.1)(64bit)
• libm.so.6()(64bit)
• libm.so.6(GLIBC_2.27)(64bit)
• libopenbabel.so.8()(64bit)
• libstdc++.so.6()(64bit)
• libstdc++.so.6(CXXABI_1.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.9)(64bit)
• libstdc++.so.6(GLIBCXX_3.4)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.15)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.18)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.32)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsZstd) <= 5.4.18-1

License

GPL-2.0-only

Changelog

* Sun Jul 12 2026 Martin Pluskal <mpluskal@suse.com>
  - Update to version 3.2.1:
    * Bug-fix and security release hardening the file-format
      parsers against crashes found by fuzzing: many null-pointer
      dereferences, heap out-of-bounds reads/writes, integer
      overflows and underflows are now guarded across GAMESS,
      Gaussian, COF/Dalton/MOPAC/molden/YOB and other
      readers, and dangling-pointer/leak issues were fixed
    * Fix out-of-bounds write in the InChI writer for molecules
      with more than 20 bonds
    * Guard the GAMESS output reader against malformed geometry
      blocks whose coordinate count is not a multiple of three
      (CVE-2025-10994, boo#1250542)
    * Fix an unsigned underflow in the SMILES implicit-hydrogen
      computation for hypervalent atoms (CVE-2025-10996,
      boo#1250544)
    * Correct the tetrazole deprotonation patterns in the pH model
    * Build fixes for system InChI headers and the PHP bindings;
      only look for wxWidgets when the GUI is requested
* Tue Jun 30 2026 Martin Pluskal <mpluskal@suse.com>
  - Drop test fixtures with incompatible licenses (boo#1269820):
    * remove test/fuzz/FuzzedDataProvider.h and
      test/files/fuzz_regress/methane-pointgroup.g09 -- test-only
      data carrying Apache-2.0-WITH-LLVM-exception and proprietary
      Gaussian-09 output; never compiled in or shipped, removed to
      keep the source tree free of incompatible-licensed material
    * add openbabel-3.2.0-drop-incompatible-fuzz-harnesses.patch to
      unwire the fuzz harnesses that include the removed header so
      the test suite keeps building (CVE coverage retained via the
      fuzz_obconversion_{sdf,smiles} harnesses)
* Sun Jun 21 2026 Martin Pluskal <mpluskal@suse.com>
  - Reference the tracking bugs for the security issues already fixed in
    the 3.2.0 update:
    * CVE-2022-* OSS-Fuzz/TALOS batch (boo#1217676)
    * CVE-2026-2704 (boo#1258501), CVE-2026-2705 (boo#1258507),
      CVE-2026-3408 (boo#1259041)
* Mon Jun 01 2026 Martin Pluskal <mpluskal@suse.com>
  - Update to version 3.2.0:
    * Add an L-BFGS optimizer, used by default for gen3d and
      conformer searches
    * New macrocycle ring builder (Dale codes) for better initial
      3D geometry of large rings
    * Add KET (Ketcher JSON) and ChemicalJSON (.cjson) format
      support
    * Drop Python 2 support; Python 3.13 supported
    * Faster, vectorized distance-geometry implementation
    * Full CMake 4 compatibility and modernized build
    * Backwards compatible with 3.0 and 3.1
    * Fix many crash and memory-safety bugs found via OSS-Fuzz
      and TALOS, including the following security issues:
      CVE-2022-37331 (boo#1217676), CVE-2022-41793, CVE-2022-42885,
      CVE-2022-43467, CVE-2022-43607, CVE-2022-44451,
      CVE-2022-46280, CVE-2022-46289, CVE-2022-46290,
      CVE-2022-46291, CVE-2022-46292, CVE-2022-46294,
      CVE-2022-46295, CVE-2025-10994, CVE-2025-10995,
      CVE-2025-10996, CVE-2025-10997, CVE-2025-10998,
      CVE-2025-10999, CVE-2025-11000,
      CVE-2026-2704 (boo#1258501), CVE-2026-2705 (boo#1258507) and
      CVE-2026-3408 (boo#1259041)
  - Shared library soname bumped to libopenbabel8 (SOVERSION 8)
  - Drop patches now fixed upstream:
    * openbabel-3.1.1-test-python3-escape-chars.patch
    * openbabel-3.1.1-test-python3-imports.patch
    * openbabel-3.1.1-version-number.patch
    * openbabel-3.1.1-gcc-12.patch
    * openbabel-3.1.1-std-binary-function.patch
    * openbabel-3.1.1-std-bind1st.patch
    * openbabel-3.1.1-std-bind2nd.patch
    * openbabel-cmake-4.patch
    * openbabel-cmake-4-exports.patch
* Wed Jul 09 2025 Friedrich Haubensak <hsk17@mail.de>
  - Until upstream provides fixed code, disable test_align_{4,5},
    known to fail w/ gcc-15; see gh#openbabel/openbabel/issues/2766
    and ..../2799
* Sat Apr 19 2025 Friedrich Haubensak <hsk17@mail.de>
  - Add openbabel-cmake-4.patch and openbabel-cmake-4-exports.patch
    to fix cmake-4 failures
* Sat Apr 19 2025 Friedrich Haubensak <hsk17@mail.de>
  - Add patches from upstream to fix compiler deprecation warnings
    * openbabel-3.1.1-std-binary-function.patch,
    * openbabel-3.1.1-std-bind1st.patch,
    * openbabel-3.1.1-std-bind2nd.patch
* Fri Mar 14 2025 Steve Kowalik <steven.kowalik@suse.com>
  - Add BuildRequires on python3-setuptools, needed for Python 3.12+.
* Tue Jul 18 2023 Andreas Schwab <schwab@suse.de>
  - Skip problematic tests and increase timeout on riscv64
* Fri Aug 26 2022 Antoine Belvire <antoine.belvire@opensuse.org>
  - Don't define %upstream version from %version: %upstream_version
    is used in Source tag and osc download service does not evaluate
    %() nor %{lua:} in Source tags for security reasons.
  - Drop entirely baselibs.conf: 32bit libraries seem unnecessary.

Files

/usr/bin/obabel
/usr/bin/obconformer
/usr/bin/obdistgen
/usr/bin/obenergy
/usr/bin/obfit
/usr/bin/obfitall
/usr/bin/obgen
/usr/bin/obgrep
/usr/bin/obminimize
/usr/bin/obmm
/usr/bin/obprobe
/usr/bin/obprop
/usr/bin/obrms
/usr/bin/obrotamer
/usr/bin/obrotate
/usr/bin/obspectrophore
/usr/bin/obsym
/usr/bin/obtautomer
/usr/bin/obthermo
/usr/bin/roundtrip
/usr/share/man/man1/obabel.1.gz
/usr/share/man/man1/obchiral.1.gz
/usr/share/man/man1/obconformer.1.gz
/usr/share/man/man1/obdistgen.1.gz
/usr/share/man/man1/obenergy.1.gz
/usr/share/man/man1/obfit.1.gz
/usr/share/man/man1/obgen.1.gz
/usr/share/man/man1/obgrep.1.gz
/usr/share/man/man1/obminimize.1.gz
/usr/share/man/man1/obprobe.1.gz
/usr/share/man/man1/obprop.1.gz
/usr/share/man/man1/obrms.1.gz
/usr/share/man/man1/obrotamer.1.gz
/usr/share/man/man1/obrotate.1.gz
/usr/share/man/man1/obspectrophore.1.gz
/usr/share/man/man1/obsym.1.gz
/usr/share/man/man1/obtautomer.1.gz
/usr/share/man/man1/obthermo.1.gz
/usr/share/man/man1/roundtrip.1.gz

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Fabrice Bellet, Sun Aug 2 03:56:04 2026